Ionic 2 - how to make ion-button with icon and text on two lines? Mean that a large amount of nuc has been handled: 100000000 -rm: cannot remove '/home/urbe/Tools/ELECTOR/swag*': No such file or directory Traceback (most recent call last): File "elector.py", line 168, in main() File "elector.py", line 136, in main You must thus provide test/simulation/simReads (the common prefix of all the files) to the -uncorrected witch. How can a GPS receiver estimate position faster than the worst case 12.5 min it takes to get ionospheric model parameters? Absolute Path Relative Path nbReads, throughput, precision, recall, corBasesRate, errorRate, extendedBases, missingSize, GCRateRef, GCRateCorr, indelsubsUncorr, indelsubsCorr, numberHomopolymersInserInCorrected, numberHomopolymersDeleInCorrected , numberHomopolymersInserInUncorrected , numberHomopolymersDeleInUncorrected, meanLengthDeleHomopolymersInUncorrected , meanLengthInserHomopolymersInUncorrected , meanLengthInserHomopolymersInCorrected , meanLengthDeleHomopolymersInCorrected = computeMetrics(outDir + "/msa_" + soft + ".fa", outMetrics, correctedFileName, reportedHomopolThreshold ) Unless all of your directories (i.e., BIN_DIR, SRC_DIR) are in the root directory (/) then that is why you're getting the error. Already on GitHub? -corrector name: here you must provide the name of the correction method that was used to correct the reads (see list of supported correctors in the README), -corrected LR.fasta: here you must provide a file of corrected long reads in fasta format Thanks for contributing an answer to Stack Overflow! We will use the touch command to create this file. Without seeing how you define the variables it is impossible to tell if your code is correct with respect to using. -reference ref.fasta: here you must provide a file containing the reference genome in fasta format I have the following structure in my project: The reason for the error is because engine-lib is never built, and its CMake file is never even processed. When using the "-perfect" option, ELECTOR is assuming the input file represents "perfect / reference" reads, that are, reads without sequencing errors. Whether you are a digital nomad or just looking for flexibility, Shells can put your Linux machine on the device that you want to use. Is there a trick for softening butter quickly? FileNotFoundError: [Errno 2] No such file or directory: '/home/urbe/Tools/ELECTOR/msa_canu.fa'. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide. Fourier transform of a functional derivative. To learn more, see our tips on writing great answers. swag help init NAME: swag init - Create docs.go USAGE: swag init [command options] [arguments.] This mostly occurs when copying and pasting an unknown source file into the operating system. File "elector.py", line 168, in Tour Start here for a quick overview of the site Help Center Detailed answers to any questions you might have Meta Discuss the workings and policies of this site # However the container name is expected to be "bitwardenrs" as it is by default the template as this name is used to resolve. 1. Is a planet-sized magnet a good interstellar weapon? For example, if you simulated a set of reads with SimLoRD in the test/simulation/ directory, this directory will contain the following files: simReads.h5, simReads.fastq, and simReads.fastq.sam. In order to build the project without Qt5Sql I just have to remove the db folder, and delete lines referring to that in my other CMakeLists.txt files. The permissions on the file or directory you're trying to access are set incorrectly. Is NordVPN changing my security cerificates? rev2022.11.3.43003. is not the same as. Some leftovers from a de-installation probably. Browse other questions tagged. How can I get a huge Saturn-like ringed moon in the sky? touch foo/bar.txt Start here for a quick overview of the site, Detailed answers to any questions you might have, Discuss the workings and policies of this site, Learn more about Stack Overflow the company, Why do you want to implement this in a Makefile? Should we burninate the [variations] tag? What am I doing wrong including Qt5Sql? Are Githyanki under Nondetection all the time? There may be many shortcomings, please advise. There are a few possible causes for the "No such file or directory" error: 1. 2. Sign in Thanks for contributing an answer to Unix & Linux Stack Exchange! conditional directives arent part of a recipe, so they mustnt start with a tab; conditional directives are evaluated as the Makefile is read, so variables must be assigned previously and cant be target-specific; phony targets should be declared as such. Horror story: only people who smoke could see some monsters. How we fix rsync no such file or directory error Here are the steps that our Support Engineers provide to our customers to get rid of this rsync error. Thanks for contributing an answer to Stack Overflow! What should I do? Why are only 2 out of the 3 boosters on Falcon Heavy reused? I don't blame you for downvoting me, just explain what did I do wrong and how can I improve Maybe engine-lib did not successfully build. If so, this is most probably why you are getting this error. 2. Who downvoted this question could explain it to me, what did I wrong questioning this topic? Should we burninate the [variations] tag? ++ /bin/wavfiletool.exe -g -O2 g++: error: /bin/wavfiletool.exe: No such file or directory g++: fatal error: no input files compilation Site design / logo 2022 Stack Exchange Inc; user contributions licensed under CC BY-SA. My question is: Why does it work if I want to include only Qt5Core, and why does it not work when I also include Qt5Sql? Stack Overflow for Teams is moving to its own domain! I have removed the '/' character. I will try your script. What should I do? How to distinguish it-cleft and extraposition? I don't think anyone finds what I'm working on interesting. You will at some point do something that is irreversible. What is the purpose of .PHONY in a Makefile? Does a creature have to see to be affected by the Fear spell initially since it is an illusion? I am using Jenkins. Have a question about this project? [oracle@joetest dbinstall]$ strace -o /tmp/output.txt lsnrctl status After reading quite a few tutorials, I have come upon the following make file. Found footage movie where teens get superpowers after getting struck by lightning? First, ensure that the file or folder that is mentioned is available. Please tell me if that helps, or if it's clear enough. Indeed, the reads from the -corrected and from the -uncorrected switches have to have matching headers. This article explains how to solve no such file or directory error in Linux Bash. Does the 0m elevation height of a Digital Elevation Model (Copernicus DEM) correspond to mean sea level? Also, we check whether the path or the location specified is correct. File "/home/urbe/Tools/ELECTOR/computeStats.py", line 444, in computeMetrics They must be the original reads for which the correction has been provided to the -corrected switch. 'It was Ben that found it' v 'It was clear that Ben found it'. @Bodo yes I define the Make variables at the top of the script and yes I take one of the shell variables and do some manipulation on it to create the Make variables..this works ok. The window return can be removed by simply executing the command: sed -i -e 's/r$//' filename. READ MORE: By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. Short story about skydiving while on a time dilation drug. 3. It reads source files from src directory, puts objects in the build directory, and puts the exe in the bin directory. The file or directory you're trying to access doesn't exist. Stack Overflow for Teams is moving to its own domain! By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. If it exists then I want to issue the Docker Container Restart command otherwise I want to issue the Docker Run command to create and start the container. No package 'gstreamer-video-1.0' found. -simulator name: here you must provide the name of the simulator that was used to simulate the read (we currently only support SimLoRD and NanoSim) By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. sh. #include <gst/gst.h>. Would it be illegal for me to act as a Civillian Traffic Enforcer? If you don't manage to run ELECTOR on the datasets you want, just describe me what you want to do, and I'll help providing you the command line. Stack Overflow for Teams is moving to its own domain! The correct line for compiling should look like this: Which means: "for every file matching the pattern "%.o" in $(BIN_DIR), compile it using the associated $(SRC_DIR)/%.cpp as argument (first dependency). Have a question about this project? One typo in the previous version was that I have .c when I am using .cpp and c++. Does activating the pump in a vacuum chamber produce movement of the air inside? fatal error: Eigen/Dense: No such file or directory. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. rev2022.11.3.43003. How to create psychedelic experiences for healthy people without drugs? How can I best opt out of this? Connect and share knowledge within a single location that is structured and easy to search. I tried with -reference on example data Hi @morispi nbReads, throughput, precision, recall, correctBaseRate, errorRate, smallReads, wronglyCorReads, percentGCRef, percentGCCorr, numberSplit, meanMissing, numberExtended, meanExtension, minLength, indelsubsUncorr, indelsubsCorr , homoInsU, homoDeleU, homoInsC, homoDeleC, homoInsUMean, homoDeleUMean, homoInsCMean, homoDeleCMean = computeStats.outputRecallPrecision(sortedCorrectedFileName, outputDirPath, logFile, smallReads, wronglyCorReads, reportedHomopolThreshold, size_corrected_read_threshold, 0, 0, soft) Asking for help, clarification, or responding to other answers. How are different terrains, defined by their angle, called in climbing? What is the difference between the GNU Makefile variable assignments =, ?=, := and +=? The offending line in your CMake file is this one: When using add_subdirectory in this manner, the second argument becomes the binary directory for the generated content related to db. Find centralized, trusted content and collaborate around the technologies you use most. Would it be illegal for me to act as a Civillian Traffic Enforcer? The offending line in your CMake file is this one: add_subdirectory ( db engine ) When using add_subdirectory in this manner, the second argument becomes the binary directory for the generated content related to db. If a creature would die from an equipment unattaching, does that creature die with the effects of the equipment? bad interpreter no such file or directory. Could this be a MiTM attack? I have a problem building my Qt5 project via cmake. ./make. For solving this problem, you could right click the Project menu->Add New Item. Use sudo. File "/home/urbe/Tools/ELECTOR/computeStats.py", line 155, in outputRecallPrecision 30 * * * * sh ./my_shell_script. The mkdir command stands for "make directory" and will create a new directory in the directory you are currently located within on the terminal. How did Mendel know if a plant was a homozygous tall (TT), or a heterozygous tall (Tt)? I don't think anyone finds what I'm working on interesting. thank you for this. Connect and share knowledge within a single location that is structured and easy to search. target_include_directories "No such file or directory". Qt5Concurrent Qt5DBus Qt5Network Qt5OpenGLExtensions Qt5Sql Qt5Widgets. The result = 1 is correct as I do have a container running. Package gstreamer-video-1. @Bodo - thanks for your comment. After I've extracted it to a folder using tar -xvzf, I've read the README file and it says that to install the program you must run three commands. When you have Grid installed you still should use sqlplus from the RDBMS software home, in your case the xe\bin directory. The os.listdir () is a built-in Python method that lists the files in the current working directory. Move the cursor outside of the code tags before you add any additional text to your reply. Finding features that intersect QgsRectangle but are not equal to themselves using PyQGIS. Update the post and add the new makefile (with the slash fix and the. Use the edit button/link for that, and the Preformatted text button to format them. 7 Welcome to Ubuntu. How do I write the 'cd' command in a makefile? thank you for this this is very helpful - also your explanation as I was struggling to follow the GNU documentation. jni.h: No such file or directory. Is there a way to make trades similar/identical to a university endowment manager to copy them? Sign up for a free GitHub account to open an issue and contact its maintainers and the community. To learn more, see our tips on writing great answers. Please include a copy of those files ( without all the boilerplate comments) in your question. Press Install and make sure you install the library, including all of its dependencies (other libraries that this library uses). When the migration is complete, you will access your Teams at stackoverflowteams.com, and they will no longer appear in the left sidebar on stackoverflow.com. Why can templates only be implemented in the header file? Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide. Perhaps you should add the directory containing `gstreamer-video-1..pc'. If a creature would die from an equipment unattaching, does that creature die with the effects of the equipment? You either want to remove the initial slash or you can use an environment variable prefix like SRC_DIR = $(MY_PROJECT_BASE_DIRECTORY)/src. So I used the command strace to check what files were being opened. Making statements based on opinion; back them up with references or personal experience. with exit code 2]. Your answers indicate sqlplus is in that directory, You don't seem to have any problem.----- Sybrand Bakker. make: *** [/bin/wavfiletool.exe] Error 1 [Finished in 0.1s Connect and share knowledge within a single location that is structured and easy to search. As a result, you may notice that CMake placed some build artifacts in your src/engine directory, which is probably not what you want. Go to Sketch > Include Library > Manage Libraries Type in the name "ArduinoIoTCloud", select it in the list and press Install. -uncorrected rawReads.fasta: here you must provide a file of uncorrected long reads in fasta format. I have removed the container and tested that the result then becomes 0 which is also correct. Finding features that intersect QgsRectangle but are not equal to themselves using PyQGIS, Fourier transform of a functional derivative. Have a question about this project? The first number is usually the more helpful of the two because you can use it to locate the error in your sketch. Another caution: please keep /home where it is intended for: to create a home for users and don't store files in /home itself; user their home to store files for that . What is the difference between the GNU Makefile variable assignments =, ?=, := and +=? As a result, you may notice that CMake placed some build artifacts in your src/engine directory, which is probably not what you want. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Without seeing at least your CMakeLists.txt and package.xml this is going to be difficult to diagnose. Also I would be grateful for any suggestions you might have for a good documentation / tutorial. Does the Fog Cloud spell work in conjunction with the Blind Fighting fighting style the way I think it does? What is the purpose of .PHONY in a Makefile? Not the answer you're looking for? Please stop using root in an Ubuntu system. Stack Overflow for Teams is moving to its own domain! I am trying to create a Makefile target which first checks to see if my Docker container exists. The following works: result = $ (shell docker ps -f name=myapp -q | wc -l) start_docker_myapp: ifeq ($ (strip $ (result)),1) @echo true else @echo false endif .PHONY: start_docker_myapp Share Improve this answer answered May 28, 2019 at 15:01 Stephen Kitt 375k 49 961 1056 "Public domain": Can I sell prints of the James Webb Space Telescope? Did Dick Cheney run a death squad that killed Benazir Bhutto? Site design / logo 2022 Stack Exchange Inc; user contributions licensed under CC BY-SA. Update the post and add the new makefile (with the slash fix and the -o fix) and show us the new error output. Water leaving the house when water cut off. to the PKG_CONFIG_PATH environment variable. It seems like what you provided you the -uncorrected switch (Sim) is an unexisting file, hence the program never stopping. To execute them externally you must use this syntax: cmd /c start . There are two types of paths in Python. Asking for help, clarification, or responding to other answers. Verb for speaking indirectly to avoid a responsibility. 'It was Ben that found it' v 'It was clear that Ben found it', An inf-sup estimate for holomorphic functions, Saving for retirement starting at 68 years old. Do US public school students have a First Amendment right to be able to perform sacred music? To subscribe to this RSS feed, copy and paste this URL into your RSS reader. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. Non-anthropic, universal units of time for active SETI. OPTIONS: --generalInfo value, -g value Go file path in which 'swagger general API Info' is written (default: "main.go") --dir value, -d value Directory you want to parse (default: "./") --propertyStrategy value, -p value Property Naming Strategy like snakecase,camelcase,pascalcase (default . How to help a successful high schooler who is failing in college? Does the 0m elevation height of a Digital Elevation Model (Copernicus DEM) correspond to mean sea level? That made me wonder what lsnrctl command was looking for. They must be the original reads for which the correction has been provided to the -corrected switch. Connect and share knowledge within a single location that is structured and easy to search. gvdhoorn ( Jun 20 '16 ) 3 . It's very easy. Stack Exchange network consists of 182 Q&A communities including Stack Overflow, the largest, most trusted online community for developers to learn, share their knowledge, and build their careers. And instead of using $(CC) (and assigning it another value than its default), you can use $(CXX), whose default value is usually g++. I have checked my Qt installation folder, and I have Qt5Core and Qt5Sql on the same directory level installed. You signed in with another tab or window. python3 elector.py -reference example/example_reference.fasta -corrected example/corrected_reads.fasta -uncorrected Sim -threads 46 -simulator simlord -output test2. Is your "toy.fasta" file an actual genome? Makefile that changes directory then compiles code, Include header file in different directory in c++, attempting to get main.cpp output using the makefile command make. This tutorial explains how to fix Can't exec make - No such file or directory at /usr/share/perl/5.14/CPAN/Distribution.pm in Ubuntu & CentOS Additional comment: I suspect some missing dependencies: usually, a .c or cpp source file doesn't only depend on the corresponding header file, but might also include other headers from the project. Use set -x to see the command that goes to grep, there's an empty filename there. Making statements based on opinion; back them up with references or personal experience. How do I simplify/combine these two methods? Report abuse Was this reply helpful? There are a number of issues with your Makefile (beyond the question of whether a Makefile is the appropriate solution): To set a variable value inside a target, you must use the eval syntax: Alternatively, you can evaluate this variable outside a rule: Instead of implementing a mix of shell script code and make variables I suggest to implement this as a pure shell script integrated in the Makefile. Some coworkers are committing to work overtime for a 1% bonus. Create directory foo with the mkdir command. An easier way is to add the library in the Library Manager. It is extremely unlikely to be the same error. UNIX is a registered trademark of The Open Group. I am now getting a different error. Can someone please advise me what I am doing wrong? By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Why does it matter that a group of January 6 rioters went to Olive Garden for dinner after the riot? To learn more, see our tips on writing great answers. ./make install. To fix the fatal error: Adafruit_I2CDevice.h: No such file or directory just add the BusIO library. Press "Ctrl + V". Asking for help, clarification, or responding to other answers. Please include the entire output from running make including the invocation of make itself and the g++ command that fails. I'm not sure why this question was down-voted. Why can templates only be implemented in the header file? ./configure. What exactly makes a black hole STAY a black hole? privacy statement. What should I do? The first step is to install the dos2unix tool using this command: $ sudo apt install dos2unix Once the tool is installed, convert the DOS file into an Ubuntu-compatible file using the following command: $ dos2unix sample.dos The system should be able to run the script file without the error being prompted after the conversion is complete. Fatal error: iostream: No such file or directory in compiling C program using GCC. Or create a new MfC application using the wizard like RLWA32 suggested, it will generate a resource.h file. I looked over your answer to the other error, but this error persists, even with the -o properly added. It's your way of saying "Thank you". Senior Oracle DBA will work. I've written it under my Ubuntu Linux using Kate editor, so it doesn't contain any . Whether you are a digital nomad or just looking for flexibility, Shells can put your Linux machine on the device that you want to use. This will paste the error between the code tags. The "19" is telling you the length of the line of code in spaces and characters. thanks a lot. What value for LANG should I use for "sort -u correctly handle Chinese characters? I will take a look at this as well. was not found in the pkg-config search path. To fix this, you must call add_subdirectory consecutive times for including multiple sub-directories. Linux is a registered trademark of Linus Torvalds. rev2022.11.3.43003. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. yes , Comment out the "proxy_redirect" line can fix the swag problem , but the onlyoffice will not functionable in nextcloud any more . Can the STM32F1 used for ST-LINK on the ST discovery boards be used as a normal chip? 2.Change the location of audit_trail initialization parameter to a valid location in the OS. After doing a rpi-update, I updated my RaspberryPi, to the 5.10.81+ kernel, but I find that the build directory does not exist in this kernel, but it does exist in the 5.10.63+ kernel.. To fix this, I had to do a downgrade with: sudo apt install --reinstall raspberrypi-bootloader raspberrypi-kernel sudo chown root /home/lisa. I am using Ubuntu 20.04, cmake version 3.16.3, Qt version 5.12.8, Qt5 Qt5Core Qt5Gui Qt5OpenGL Qt5PrintSupport Qt5Test Qt5Xml Employer made me redundant, then retracted the notice after realising that I'm about to start on a new project. -uncorrected SimLRPrefix: here you must provide the prefix of the simulated reads files. How can I find a lens locking screw if I have lost the original one? The first of the three runs fine but when I try to execute the second one (./make) I get the following error: bash: ./make: No such file or directory. Find centralized, trusted content and collaborate around the technologies you use most. Well occasionally send you account related emails. thank you for the explanation and example this is also very helpful. Use the keyboard combination Ctrl + X to exit nano. Hello everyone When I run the sample script: python scripts/txt2img.py --prompt "a photograph of an astronaut riding a horse" --plms I get the following: Loading model from models/ldm/sta. How can i extract files in the directory where they're located with the find command? Edit: The structure we're using follows these guidelines: https://github.com/golang-standards/project-layout Member Please remember to mark my reply by clicking "Did this solve your problem?". If the desktop directory is ~/Desktop, then cd ~/Desktop will take you there. I edited my Makefile with your suggestion, and now get this error: This does not come from the recipe I gave here, but from the 'link' recipe: you have the following dependency: Makefile error: No such file or directory, Making location easier for developers with new data primitives, Stop requiring only one assertion per unit test: Multiple assertions are fine, Mobile app infrastructure being decommissioned, 2022 Moderator Election Q&A Question Collection. Why does it matter that a group of January 6 rioters went to Olive Garden for dinner after the riot? Reason for use of accusative in this phrase? Find centralized, trusted content and collaborate around the technologies you use most. Not the answer you're looking for? How to help a successful high schooler who is failing in college? (I have temporarily commented out the docker commands and replaced them with echo true / false just while I am debugging). The file or directory you're trying to access is located in a different directory than the one you're currently in. To check all the files in the directory, use the os.listdir () method. I have edited the makefile. It said "No listener" was expected, but I didn't remember I had seen the error "No such file or directory" before. What's a good single chain ring size for a 7s 12-28 cassette for better hill climbing? Change directory in the terminal to where the Python script is actually located. Your commands contain both shell variables like. What value for LANG should I use for "sort -u correctly handle Chinese characters? to your account, I tried this as well, but ended with following error, ELECTOR git:(master) python3 elector.py -perfect /media/urbe/ARCgenomic/toyGenome/toy.fasta -uncorrected /media/urbe/ARCgenomic/toyGenome/toyLongReads.fasta -corrected /home/urbe/Tools/canu/Linux-amd64/bin/simTest20x/simTest20x.correctedReads.fasta -threads 40 -split -corrector canu, Traceback (most recent call last): Making statements based on opinion; back them up with references or personal experience. Please do not include answers related to QtCreator, or Qt installation errors. Not the answer you're looking for? If the text exceeds the forum's 9000 character limit, save it to a .txt file and post it as an attachment. How to find specific/local files via CMake, There is an error "cannot create .moc/main.moc ", when I compile the mysql driver for Qt5.7, How to include libraries in OSX bundles with CMAKE, fail to use Q_OBJECT Macro in CMake Project, Cmake: make static library and use in other projects, Clang with cmake. To create a new file named 02proxy in the /etc/apt/apt.conf.d directory (which normally already exists) open the terminal and type: Use the keyboard combination Ctrl + O and after that press Enter to save the file to its current location. With over 10 pre-installed distros to choose from, the worry-free installation life is here! /home#. You may then run the python3 command as above. I run the command cmake .. && make from the directory build and I receive the following error: I have searched this topic briefly, however when I ran this project without Qt5Sql, using only Qt5Core I have no problem at all building the project. msa = open(fileName, 'r') Making location easier for developers with new data primitives, Stop requiring only one assertion per unit test: Multiple assertions are fine, Mobile app infrastructure being decommissioned, 2022 Moderator Election Q&A Question Collection. Adding a "test.go" file to project root makes Swag output the following error instead: Adding a "main.go" file to project root makes it work just fine. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Hopefully this Adafruit_I2CDevice h No such file or directory article is useful. It still gives the same error. Found footage movie where teens get superpowers after getting struck by lightning? In C, why limit || and && to evaluate to booleans? Best way to get consistent results when baking a purposely underbaked mud cake. Cypress has got a script to clear the registry, so create a Support Case (at top of this page click on "Design Support" and select "Create a Support Case" Bob View solution in original post 0 Likes Reply All forum topics Previous Topic Next Topic 7 Replies Bob_Marlowe Level 10 Nov 07, 2015 04:07 PM Which means: "for every file matching the pattern "%.o" in $(BIN_DIR), compile it using the associated $(SRC_DIR)/%.cpp as argument (first dependency) Additional comment: I suspect some missing dependencies: usually, a .c or cpp source file doesn't only depend on the corresponding header file, but might also include other headers from the project.